Dr. Jan Brocher

Scientific Image Processing and Analysis

01.02.2017, 09:00 - 17:00
02.02.2017, 09:00 - 17:00
Haus zur Rosen (Auditorium)
Anmeldung möglich bis: 01.02.2017
ECTS
1.0
en
30 €

This two-day course on basics in processing and analysis of digital images according to high scientific standards covers:

  • ƒƒ Basics in microscopy, good image acquisition, resolution and sampling
  • ƒƒ Correct resizing, contrast improvement and labeling
  • ƒƒ Reducing background and noise
  • ƒƒ Application of image filters for post-processing
  • ƒƒ Feature (cells, objects) extraction by segmentation with thresholding
  • ƒƒ Automatic counting, measurements and creation of automatic selections (ROIs)
  • ƒƒ Measurements and quantifications of (fluorescence) intensities
  • ƒƒ optional: Analysis of brightfield / color images, working with image stacks and higher dimensional images
  • ƒƒ Figure preparation guideline (good scientific practice and ethics)
  • ƒƒ Batch processing, automation of your analyses (using macros)

The workshop has a focus on life science applications and microscopic images. We will use the professional software ImageJ / Fiji for processing and analysis. Prior knowledge of the software is not required. Software and workshop script will be provided. Please bring your own laptop.

Die Anmeldefrist für diesen Kurs ist abgelaufen.