Dr. Jan Brocher

Scientific Image Processing and Analysis

24.07.2018, 09:00 - 17:00
25.07.2018, 09:00 - 17:00
Haus zur Rosen (Auditorium)
Anmeldung möglich bis: 24.07.2018
ECTS
1
en
30 €

This two-day course on basics in processing and analysis of digital im-ages according to high scientific standards covers:

  • Basics in microscopy, good image acquisition, resolution and sampling
  • Correct resizing, contrast improvement and labeling
  • Reducing background, and the use of basic image filters
  • Application of image filters for post-processing
  • Feature (cells, objects) extraction by segmentation with thresholding
  • Automatic object counting and measuring
  • Measurements and quantifications of fluorescence intensities (optional: Western blots)
  • optional: Analysis of brightfield / color images (e.g. photographs)
  • Working with image stacks and higher dimensional images
  • Figure preparation guideline (including good scientific practice and ethics)
  • Batch processing, automation of your analyses (using macros)

The workshop has a focus on life science applications and microscopic images. We will use the professional software ImageJ / Fiji for processing and analysis. Prior knowledge of the software is not required.

Die Anmeldefrist für diesen Kurs ist abgelaufen.